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Scientist II/Senior Scientist, Computational Chemistry, Drug Discovery

Alewife, Cambridge, MA💼 Full-time💰 $140,800–$140,800🗓 2026-08-03 → 2026-09-27

Core

Scientist evaluating and improving AI-driven drug discovery workflows to ensure agent-generated optimization plans and compound prioritizations are scientifically valid.

Role type

Senior IC computational chemist (AI/ML oversight)

Builds

Open-source-first computational chemistry workflows for docking, virtual screening, SAR, and property modeling integrated into agentic discovery systems.

Domain

Biopharma / Computational Chemistry / AI for Science

Deliverable

production ML models | product features

Required skills

Protein-ligand binding modeling, Docking, Virtual screening, SAR modeling, Conformer generation, Pharmacophore modeling, QSAR, ADMET prediction, Cheminformatics, Python programming, Open-source workflow development, Medicinal chemistry reasoning

Preferred skills

FEP, MM/GBSA, Molecular dynamics, Automated/agentic system integration, High-throughput screening data analysis

Technologies

RDKit, Biopython, OpenMM, MDAnalysis

Responsibilities

Monitor and review drug discovery agents' computational chemistry workflows for scientific validity; Evaluate agent-generated drug discovery plans combining chemistry, biophysics, and simulation; Advise on compound prioritization across discovery programs; Define computational chemistry tools and inputs for agents; Lead computational chemistry strategy for live drug discovery programs; Build or guide creation of open-source workflows for docking, virtual screening, and property modeling; Partner with medicinal chemists, biologists, and ML scientists to improve AI-assisted discovery loops.

Seniority

Senior, hands-on IC

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