Research Software Engineer / Software Developer for Imaging and Spatial Omics Data
Core
Develop and extend the GUIDE metadata platform and integrate OMERO imaging platform with genomic data to enable FAIR management of imaging and spatial omics data.
Role type
Research Software Engineer (Imaging and Spatial Omics)
Builds
Metadata platform (GUIDE), integration of OMERO with genomic data, metadata schemas (RO-Crate), and data validation tools.
Domain
Life Sciences / Bioinformatics / Spatial Omics / Data Management
Required skills
Kotlin, Java, Python, JavaScript, Linux, Containerization, Cloud technologies, System administration
Preferred skills
Research data management (omics/imaging), OMERO, Ontologies, RO-Crate, SpatialData framework, Open-source software engineering, HPC
Technologies
Kotlin, Java, Python, JavaScript, OMERO, RO-Crate, Linux
Responsibilities
Develop and extend the GUIDE metadata platform; Design and build integration of OMERO with genomic data; Implement user and permission management; Implement metadata schemas and packaging formats; Build tools to collect, organize, and validate research data; Co-organize hackathons and organize workshops.
Seniority
Mid-Senior, hands-on IC
