Genome-Scale Metabolic Modelling of Industrial Microbes [6 Months Internship]
Core
Develop automated high-throughput metabolic network reconstruction and analysis pipelines for industrial yeasts and bacteria genomic data.
Role type
Bioinformatics intern (metabolic modelling & pipeline development)
Builds
Versioned Nextflow pipelines for metabolic network reconstruction and QC
Domain
Industrial biotechnology / Genomics / Metabolic engineering
Deliverable
production ML models
Required skills
Python, Nextflow, Git/Gitlab, Docker, Anaconda, genomics, biochemistry, microbial metabolism, constraint-based reconstruction and analysis (COBRA)
Preferred skills
None stated
Technologies
Nextflow, Git, Gitlab, Docker, Anaconda
Responsibilities
Implement methods for automated high-throughput metabolic network reconstruction; Develop and diversify microorganism genomic annotation workflows; Formalize reproducible and efficient pipelines for large-scale application
Seniority
Intern
