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Scientist II/Senior Scientist, Computational Biophysics

Alewife, Cambridge, MA💼 Full-time💰 $140,800–$140,800🗓 2026-08-03 → 2026-09-26

Core

Define scientific requirements and validate molecular simulation workflows for AI agents to ensure reliable drug discovery tools.

Role type

Senior IC computational biophysics scientist (molecular simulation & agentic platform design)

Builds

Validated RBFE/ABFE workflows, automated biophysics tools, and scientific guardrails for LLM agents

Domain

Drug discovery, computational biophysics, molecular simulation

Deliverable

production ML models | product features

Required skills

molecular dynamics simulation, MM/GBSA, free-energy perturbation methods (RBFE/ABFE), molecular parameterization, force field selection, statistical mechanics, protein-ligand binding modeling, scientific validation standards

Preferred skills

OpenMM, OpenFE, large-scale GPU simulation infrastructure, automated scientific workflows, cofolding, ML-assisted molecular modeling, active learning, LLM agent integration

Technologies

OpenMM, OpenFE

Responsibilities

Define scientific requirements for agent-usable biophysics tools; design and validate molecular simulation workflows; establish standards for system setup and quality control; build robust RBFE/ABFE workflows with automated checks; evaluate and integrate open-source simulation tools; identify and mitigate failure modes in simulations; partner with ML and research engineering teams to scale workflows

Seniority

Senior, hands-on IC

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