Senior Software Engineer
Core
Lead the design, development, and deployment of a research data sharing and analysis platform for the AllClear program to make single-cell omics and matched clinical information accessible to researchers.
Role type
Senior Software Engineer (Research Data Platform)
Builds
Gen3-based research data platform on Google Cloud Platform for the AllClear consortium
Domain
Biomedical research / Genomics / Cloud Infrastructure
Required skills
Python, Bash, TypeScript, React, Next.js, Google Cloud Platform, Kubernetes, Helm, Terraform, OpenTofu, PostgreSQL, GNU/Linux system administration, Git
Preferred skills
Gen3 platform experience, single-cell omics data formats (h5ad, AnnData), clinical data handling, CI/CD pipelines, genomics standards (SAM/CRAM/VCF), big-data frameworks (Spark, Elasticsearch)
Responsibilities
Lead deployment and operation of Gen3 platform on GCP; Coordinate data curation and ETL workflows; Design integrations between Gen3 and visualization tools; Contribute to platform architecture and design; Perform DevOps tasks including Kubernetes and IaC; Engage stakeholders to translate needs into technical requirements; Mentor team members; Contribute to open-source tools
Seniority
Senior, hands-on IC with mentorship responsibilities
